In Journal of biomedical informatics ; h5-index 55.0
Expert microscopic analysis of cells obtained from frequent heart biopsies is vital for early detection of pediatric heart transplant rejection to prevent heart failure. Detection of this rare condition is prone to low levels of expert agreement due to the difficulty of identifying subtle rejection signs within biopsy samples. The rarity of pediatric heart transplant rejection also means that very few gold-standard images are available for developing machine learning models. To solve this urgent clinical challenge, we developed a deep learning model to automatically quantify rejection risk within digital images of biopsied tissue using an explainable synthetic data augmentation approach. We developed this explainable AI framework to illustrate how our progressive and inspirational generative adversarial network models distinguish between normal tissue images and those containing cellular rejection signs. To quantify biopsy-level rejection risk, we first detect local rejection features using a binary image classifier trained with expert-annotated and synthetic examples. We converted these local predictions into a biopsy-wide rejection score via an interpretable histogram-based approach. Our model significantly improves upon prior works with the same dataset with an area under the receiver operating curve (AUROC) of 98.84% for the local rejection detection task and 95.56% for the biopsy-rejection prediction task. A biopsy-level sensitivity of 83.33% makes our approach suitable for early screening of biopsies to prioritize expert analysis. Our framework provides a solution to rare medical imaging challenges currently limited by small datasets.
Giuste Felipe O, Sequeira Ryan, Keerthipati Vikranth, Lais Peter, Mirzazadeh Ali, Mohseni Arshawn, Zhu Yuanda, Shi Wenqi, Marteau Benoit, Zhong Yishan, Tong Li, Das Bibhuti, Shehata Bahig, Deshpande Shriprasad, Wang May D
2023-Jan-31
Cardiac pathology, Explainable artificial intelligence, Image classification, Image generation, Multiple instance learning, Whole-slide imaging
